Stem-loop sha-mir-21

Accession

MI0019641

Description

Sarcophilus harrisii sha-mir-21 precursor miRNA

Gene family

MIPF0000060; mir-21

Literature search

1 open access papers mention sha-mir-21
(3 sentences)

Sequence

aauugaucaauguauguuccaucaauccugcuugaauauccacuuuguacccaucaucgucugugacaucuccauggcuguaccguccugucagaUAGCUUAUCAGACUGAUGUUGACUGuuggaucucauggcaacagcagucgauggg
..................(((((....((((((((..(((((....((...(((((..(((((((((((((.((.(((......))).))..)))).).))).))))))))))...))...))))).))).......)))))..))))).

Structure

aauugaucaauguauguu     aauc     -------   au     cuuu  acc     uc     -   - -    -c  u   ug 
                  ccauc    cugcu       uga  aucca    gu   cauca  gucug uga c aucu  ca ggc  u
                  |||||    |||||       |||  |||||    ||   |||||  ||||| ||| | ||||  || |||   
                  gguag    gacga       acu  uaggu    CA   GUAGU  CAGAC AUU G Uaga  gu cug  a
-----------------g     --cu     caacggu   -c     -uGU  GUU     --     U   C A    cu  c   cc 

Annotation confidence Not enough data

Genome context

GL856812.1: 2094225-2094374 [-]

Mature sha-miR-21

• Accession: MIMAT0022813
• Description: Sarcophilus harrisii sha-miR-21 mature miRNA
• Sequence: 96 - UAGCUUAUCAGACUGAUGUUGACUG - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87