Stem-loop sha-mir-101

Accession

MI0019638

Description

Sarcophilus harrisii sha-mir-101 precursor miRNA

Gene family

MIPF0000046; mir-101

Sequence

guggagcaaggcuccggaugccucggccuuugugcggaugugaucacugacgggcugcccuggcucaguuaucacagugcugaugcuguccguucucaagGUACAGUACUGUGAUAACUGAaggauggcagccaucuugccaccggucac
.((((((...))))))........((((..((.((((((((........)).(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....)))))))))).)))))..))))..

Structure

guggagcaaggcuccggaugccuc    uu  u   -   gugaucacugacg       cuggc                  a    guccg 
                        ggcc  ug gcg gau             ggcugcc     ucaguuaucacagugcug ugcu     u
                        ||||  || ||| |||             |||||||     |||||||||||||||||| ||||      
                        cugg  ac cgu cua             ccgacgg     AGUCAAUAGUGUCAUGAC AUGg     u
----------------------ca    cc  -   u   -------------       uagga                  -    aacuc 

Annotation confidence Not enough data

Genome context

GL856736.1: 1265417-1265566 [+]

Mature sha-miR-101

• Accession: MIMAT0022811
• Description: Sarcophilus harrisii sha-miR-101 mature miRNA
• Sequence: 101 - GUACAGUACUGUGAUAACUGA - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87