miRBase entry: sha-mir-125b

Stem-loop sha-mir-125b


Accession
MI0019637
Description
Sarcophilus harrisii sha-mir-125b precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

uccaaaauauccguacuauagaagaaagaauucuacugcaucaaauaagacuuuuccuagucccugagacccuaacuugugagauuuuuuagcaauaaucACAGGUCAGGCUCUUGGGACCuaggcggaggggaaccagcagcucuggac
.........((((((...(((((.......))))).)))...........((((.(((((((((.((((.(((.((((((((................)))))))).))).)))))))).))))).)))).))).((((.....))))..

Structure
-------uccaaaaua   guacuauagaagaaagaauucuacugcaucaaauaaga    u     -    u    c   a        gauuuuu 
                ucc                                      cuuu ccuag uccc gaga ccu acuuguga       u
                |||                                      |||| ||||| |||| |||| ||| ||||||||        
                agg                                      gagg ggauC AGGG UUCU GGA UGGACAcu       a
caggucucgacgacca   -------------------------------------g    c     C    -    C   C        aauaacg 


Annotation confidence Not enough data
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Genome context
GL850548.1: 23475-23624 [+]

Database links

Mature sha-miR-125b

Accession MIMAT0022810
Description Sarcophilus harrisii sha-miR-125b mature miRNA
Sequence 101 - ACAGGUCAGGCUCUUGGGACC - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87