miRBase entry: sha-mir-30c

Stem-loop sha-mir-30c

Accession

MI0019635

Description

Sarcophilus harrisii sha-mir-30c precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

cucuucaggagacaaccaugauguagugugUGUAAACAUCCUACACUCUCAGCUgugagcucaagguggcugggagagggcuguuuacuccuucugccauggaaaaccccagaugaacuucguaagaagacagcucucccugugggaggg
.((.((.((.(....(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))))))))....).)).)).)).((((....))))....(((((((...)))))))

Structure

---------------------------------c  u  a  a acaa     au    ugu U       U   ACA         guga   c 
                                  uc uc gg g    ccaug  guag   g GUAAACA CCU   CUCUCAGCU    gcu  
                                  || || || |    |||||  ||||   | ||||||| |||   |||||||||    ||| a
                                  ag ag cc c    gguac  cguc   c cauuugu ggg   gagggucgg    ugg  
gggagggugucccucucgacagaagaaugcuuca  u  a  c aaaa     --    uuc u       c   --a         ----   a

Annotation confidence Not enough data

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Genome context

GL849784.1: 539136-539285 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-30c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-30c

Accession	MIMAT0022808
Description	Sarcophilus harrisii sha-miR-30c mature miRNA
Sequence	31 - UGUAAACAUCCUACACUCUCAGCU - 54
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87