Stem-loop sha-mir-125a

Accession

MI0019629

Description

Sarcophilus harrisii sha-mir-125a precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

agaaaggaaugucuguugcgccccucucaaUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagcugugaguugugccuuugcaucugggauauuugguggaacuuuuuuuuuucuguuuguuu
(((((((((.....(((.((((.(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).))).(((.((.........)).)))...)))).)))...)))))))))........

Structure

--------         ugucu   g    ------------------------c   u  -a    U    C           Au     c 
        agaaaggaa     guu cgcc                         cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
        |||||||||     ||| ||||                         ||| ||  |||| |||| |||||||||||  ||||| g
        ucuuuuuuu     caa gugg                         gag gu  aggg uucu ggauugggcac  uaaau u
uuuguuug         --uuu   g    uuuauagggucuacguuuccguguu   u  cg    -    c           -c     u 

Annotation confidence Not enough data

Genome context

GL849656.1: 1066094-1066243 [+]

Mature sha-miR-125a

• Accession: MIMAT0022802
• Description: Sarcophilus harrisii sha-miR-125a mature miRNA
• Sequence: 31 - UCCCUGAGACCCUAACUUGUGA - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87