miRBase entry: sha-mir-100

Stem-loop sha-mir-100

Accession

MI0019627

Description

Sarcophilus harrisii sha-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

caagagaagauucuggggccuguugccacaAACCCGUAGAUCCGAACUUGUggugauauuccacacaagcuugugucuauagguaugugucugucaggcaaucucacaaaccaggggccuguucuguauauggcacuucguagccauuga
..((((.((.((((((.(((((....((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).....)))))...........))))))..)).))))....(((((........)))))...

Structure

-----------------------ca    a  -a      ----------g     -uugc    A   C      C   A      g  au 
                         agag ag  uucugg           gccug     caca ACC GUAGAU CGA CUUGUg ug  a
                         |||| ||  ||||||           |||||     |||| ||| |||||| ||| |||||| ||   
                         ucuu uc  gggacc           cggac     gugu ugg uaucug guu gaacac ac  u
aguuaccgaugcuucacgguauaug    g  cg      aaacacucuaa     ugucu    a   a      u   c      -  cu

Annotation confidence Not enough data

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Genome context

GL849656.1: 1017612-1017761 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-100

Accession	MIMAT0022800
Description	Sarcophilus harrisii sha-miR-100 mature miRNA
Sequence	31 - AACCCGUAGAUCCGAACUUGU - 51
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87