miRBase entry: sha-mir-222

Stem-loop sha-mir-222


Accession
MI0019623
Description
Sarcophilus harrisii sha-mir-222 precursor miRNA
Gene family
MIPF0000051; mir-221


Sequence

ccuuccacagaauaucuccaugaaaagauauggugccuucugccuguuuugucccucauucgcucaguagucaguguagauccugucccuuucaaucagcAGCUACAUCUGGCUACUGGGUcucugauggcaucuuagagcuucucuccc
.......(((((.....(((((......)))))....))))).(((...((.((.(((...((((((((((((((((((...(((...........)))...))))).)))))))))))))...))).))))...)))............

Structure
ccuuccacagaauaucuccaugaaaagauauggugccuucugc   uuu  u  c   uuc             -     auc   uccc 
                                           cug   ug cc uca   gcucaguagucag uguag   cug    u
                                           |||   || || |||   ||||||||||||| |||||   |||    u
                                           gau   ac gg agu   UGGGUCAUCGGUC ACAUC   gac    u
-------------------------------cccucucuucga   ucu  -  u   cuc             U     GAc   uaac 


Annotation confidence Not enough data
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Genome context
GL849540.1: 1793800-1793949 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sha-mir-222
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sha-miR-222

Accession MIMAT0022796
Description Sarcophilus harrisii sha-miR-222 mature miRNA
Sequence 101 - AGCUACAUCUGGCUACUGGGU - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87