miRBase entry: sha-mir-1546

Stem-loop sha-mir-1546


Accession
MI0019622
Description
Sarcophilus harrisii sha-mir-1546 precursor miRNA


Sequence

cggcacucggagcugcagccuuggaagaaaAUAGGGAUUCUGAGAGGUGGAagguauuuugucucacuuccaucccugagaaucccugauucccgccaaggcaucuuccuucuguuccagcuuuuaucggacagccuccggucucggcgg
(((.((.((((((((..(((((((.......((((((((((.((.((((((((.............)))))))).)).)))))))))).......))))))).............(((..........)))))).))))))).)))....

Structure
----   c  u     -   ---------------------------ca       aagaaaA          G  A        guauu 
    cgg ac cggag cug                             gccuugg       UAGGGAUUCU AG GGUGGAag     u
    ||| || ||||| |||                             |||||||       |||||||||| || ||||||||     u
    gcu ug gccuc gac                             cggaacc       gucccuaaga uc cuaccuuc     g
ggcg   c  -     c   aggcuauuuucgaccuugucuuccuucua       gcccuua          g  c        acucu 


Annotation confidence Not enough data
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Genome context
GL842385.1: 61284-61433 [+]

Database links

Mature sha-miR-1546

Accession MIMAT0022795
Description Sarcophilus harrisii sha-miR-1546 mature miRNA
Sequence 31 - AUAGGGAUUCUGAGAGGUGGA - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87