Stem-loop sha-mir-193

Accession

MI0019619

Description

Sarcophilus harrisii sha-mir-193 precursor miRNA

Gene family

MIPF0000082; mir-193

Sequence

ucauuaguuguguaagauauucccgcuguagaaaggagccucugacgguugugauuccagagucgggguuuugagggcgagaugaguuuauguuuuauccAACUGGCCCACAAAGUCCCGCuuuugguggucacuuuaaucaacaaggga
....................((((..(((.((....((((......))))((((((((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).)))))).)))))).....)).))).))))

Structure

ucauuaguuguguaagauau    gc   a  aaggagccucugacgguu      -      u          a    g  a  a  uua 
                    uccc  ugu ga                  gugauu ccagag cgggguuuug gggc ag ug gu   u
                    ||||  ||| ||                  |||||| |||||| |||||||||| |||| || || ||   g
                    aggg  aca cu                  cacugg gguuuu GCCCUGAAAC CCCG UC Ac ua   u
--------------------    -a   a  -------------aauuu      u      C          A    G  A  c  uuu 

Annotation confidence Not enough data

Genome context

GL841527.1: 136479-136628 [+]

Mature sha-miR-193

• Accession: MIMAT0022792
• Description: Sarcophilus harrisii sha-miR-193 mature miRNA
• Sequence: 101 - AACUGGCCCACAAAGUCCCGC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87