miRBase entry: sha-mir-23a

Stem-loop sha-mir-23a

Accession

MI0019612

Description

Sarcophilus harrisii sha-mir-23a precursor miRNA

Gene family

MIPF0000027; mir-23

Sequence

cuccuuucuaggucugagcuuccucuaugguccucgacccagcaccccugagccuuggccggcugggguuccuggggaugggauuugauuacugccacaaAUCACAUUGCCAGGGAUUUccaacugaccacuggcccugcugcugaagcu
..........((((.(((...((.....))..)))))))(((((...(.(.(((.(((.(((.((((((((((((.((((.((((((..........)))))).)))).))))))).))))).))).)))..))).).).))))).....

Structure

cuccuuucuaggucugagcuuccucuaugguccucgacc     ccc u a   -u   c   c     -       g    g      auua 
                                       cagca   c g gcc  ugg cgg ugggg uuccugg gaug gauuug    c
                                       |||||   | | |||  ||| ||| ||||| ||||||| |||| ||||||     
                                       gucgu   g c cgg  acc guc accUU AGGGACC UUAC CUAaac    u
----------------------------------ucgaa     --c u c   uc   a   a     U       G    A      accg

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

GL841415.1: 820911-821060 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-23a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-23a

Accession	MIMAT0022786
Description	Sarcophilus harrisii sha-miR-23a mature miRNA
Sequence	101 - AUCACAUUGCCAGGGAUUU - 119
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87