miRBase entry: sha-mir-133a

Stem-loop sha-mir-133a


Accession
MI0019610
Description
Sarcophilus harrisii sha-mir-133a precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

acaaaaaaaaaaacccauaauuuucaaaucaaacagcucuaaagcaugacaaugcuuugcuaaagcugguaaaauggaaccaaaucaccuauucaauggaUUUGGUCCCCUUCAACCAGcuguagcuaugcauugauuacuacaagaaag
...................................(((....)))....((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))...............

Structure
acaaaaaaaaaaacccauaauuuucaaaucaaacagcucuaaagcauga      uuu    a       aa  u  a        accua 
                                                 caaugc   gcua agcuggu  aa gg accaaauc     u
                                                 ||||||   |||| |||||||  || || ||||||||      
                                                 guuacg   cgau ucGACCA  UU CC UGGUUUag     u
----------------------------------gaaagaacaucauua      uau    g       AC  C  C        guaac 


Annotation confidence Not enough data
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Genome context
GL841304.1: 692704-692853 [+]

Database links

Mature sha-miR-133a

Accession MIMAT0022784
Description Sarcophilus harrisii sha-miR-133a mature miRNA
Sequence 101 - UUUGGUCCCCUUCAACCAG - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87