Stem-loop sha-mir-126

Accession

MI0019605

Description

Sarcophilus harrisii sha-mir-126 precursor miRNA

Gene family

MIPF0000115; mir-126

Sequence

ggaguccuccaagcuugucuccucuccaccacagaaggaaauucugggccgcugacgaugggucauuauuacuuuugguacgcgcugugacacaucaaacUCGUACCGUGAGUAAUAAUgcgccauuggcagccugggcagcaagaaaga
(((....)))...(((((..(((.....((.(((((.....)))))))..((((.((((((..(((((((((((.(((((((.....(((....)))....))))))).)))))))))))..)))))).))))..)))..))))).....

Structure

ggaguccuccaag     cu   cuccaccacagaaggaaauucugggcc    a      gu           u       cgcug   c 
             cuugu  ccu                           gcug cgaugg  cauuauuacuu ugguacg     uga a
             |||||  |||                           |||| ||||||  ||||||||||| |||||||     |||  
             gaacg  ggg                           cgac guuacc  gUAAUAAUGAG GCCAUGC     acu c
--------agaaa     ac   -------------------------uc    g      gc           U       -Ucaa   a 

Annotation confidence Not enough data

Genome context

GL834949.1: 4222-4371 [+]

Mature sha-miR-126

• Accession: MIMAT0022779
• Description: Sarcophilus harrisii sha-miR-126 mature miRNA
• Sequence: 101 - UCGUACCGUGAGUAAUAAU - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87