Stem-loop sha-mir-216b

Accession

MI0019602

Description

Sarcophilus harrisii sha-mir-216b precursor miRNA

Gene family

MIPF0000054; mir-216

Sequence

ucccaaccugaaugugaguugcagacugggAAAUCUCUGCAGGCAAAUGUGguguugcuauaguuaucacacaauuaccuguagagauucugcaaucugacaucauacaucagaucugugauuuucuccacuauguuucuguuguuucuu
........(((.(((.(((((((((.......(((((((((((.((.((((..((.((....)).))..)))).)).)))))))))))))))))).)).)))))).(((.((((...(((........)))......)))).))).....

Structure

-------------------------------------ucccaacc   a   g  -       cugggAA           C  A    gu  u  u 
                                             uga ugu ag uugcaga       AUCUCUGCAGG AA UGUG  gu gc a
                                             ||| ||| || |||||||       ||||||||||| || ||||  || ||  
                                             acu aca uc aacgucu       uagagaugucc uu acac  ua ug u
uucuuuguugucuuuguaucaccucuuuuagugucuagacuacau   -   g  u       -------           a  a    ac  u  a 

Annotation confidence Not enough data

Genome context

GL834734.1: 1003764-1003913 [+]

Mature sha-miR-216b

• Accession: MIMAT0022776
• Description: Sarcophilus harrisii sha-miR-216b mature miRNA
• Sequence: 31 - AAAUCUCUGCAGGCAAAUGUG - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87