miRBase entry: ola-mir-145

Stem-loop ola-mir-145


Accession
MI0019562
Description
Oryzias latipes ola-mir-145 precursor miRNA
Gene family
MIPF0000079; mir-145

Literature search
1 open access papers mention ola-mir-145
(2 sentences)

Sequence

gUCCAGUUUUCCCAGGAAUcccuugggcugucaaaaaaggggauuccuggaaauacugau
...((((.((.(((((((((((((.............))))))))))))).)).))))..

Structure
gUC    U  C             gggcu 
   CAGU UU CCAGGAAUcccuu     g
   |||| || |||||||||||||     u
   guca aa gguccuuagggga     c
-ua    u  a             aaaaa 


Annotation confidence Not enough data
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Genome context
ultracontig115: 5320131-5320190 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-145
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-145

Accession MIMAT0022669
Description Oryzias latipes ola-miR-145 mature miRNA
Sequence 2 - UCCAGUUUUCCCAGGAAU - 19
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8