miRBase entry: ola-mir-92a-1

Stem-loop ola-mir-92a-1


Accession
MI0019537
Description
Oryzias latipes ola-mir-92a-1 precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
2 open access papers mention ola-mir-92a-1
(3 sentences)

Sequence

cagaagcgaacccuuucugugcagguugggagagguggcaaugcucugugcuugggguggUAUUGCACUUGUCCCGGCCUGuugaggacauggggacuguucug
(((((..(..(((.((((..(((((((((((.(((((.(((((((((........)).)))))))))))).)))))))))))..))))...)))..)..)))))

Structure
     gc aa   --u    gu           g     g       -  gug 
cagaa  g  ccc   uucu  gcagguuggga aggug caaugcu cu   c
|||||  |  |||   ||||  ||||||||||| ||||| ||||||| ||    
gucuu  c  ggg   agga  uGUCCGGCCCU UUCAC GUUAUgg gg   u
     gu ag   uac    gu           G     -       u  ggu 


Annotation confidence Not enough data
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Genome context
21: 25693131-25693234 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ola-mir-92a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-92a

Accession MIMAT0022534
Description Oryzias latipes ola-miR-92a mature miRNA
Sequence 61 - UAUUGCACUUGUCCCGGCCUG - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8