miRBase entry: ola-let-7c

Stem-loop ola-let-7c


Accession
MI0019504
Description
Oryzias latipes ola-let-7c precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention ola-let-7c
(12 sentences)

Sequence

augugugcauccggguUGAGGUAGUAGGUUGUAUGGUuuagaauuacacccugggaguuaacuguacaaccuucuagcuuuccuuggagcgcacgu
((((((((.((((((..(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))..))))))))))))))

Structure
        a      uU   G   U             uag   ua ac 
augugugc uccggg  GAG UAG AGGUUGUAUGGUu   aau  c  c
|||||||| ||||||  ||| ||| |||||||||||||   |||  |   
ugcacgcg agguuc  uuc auc uccaacaugucaa   uug  g  c
        -      cu   g   u             ---   ag gu 


Annotation confidence Not enough data
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Genome context
14: 1150882-1150977 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ola-let-7c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-let-7c

Accession MIMAT0022628
Description Oryzias latipes ola-let-7c mature miRNA
Sequence 17 - UGAGGUAGUAGGUUGUAUGGU - 37
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8