miRBase entry: ola-mir-101b

Stem-loop ola-mir-101b


Accession
MI0019486
Description
Oryzias latipes ola-mir-101b precursor miRNA
Gene family
MIPF0000046; mir-101

Literature search
1 open access papers mention ola-mir-101b
(2 sentences)

Sequence

gggcaguggacuaugaacuguccauuuUCAGUUAUCAUGGUACCGGUGCUgugugccuaucaaGUACAGUACUAUGAUAACUgaagauuggcagugccaucgcuguac
..((((((....(((.((((((.((((((((((((((((((((..(((((............))))).)))))))))))))))))))).))))))..)))))))))..

Structure
gg      gacu   -a      c                    CG     gugug 
  gcagug    aug  acuguc auuuUCAGUUAUCAUGGUAC  GUGCU     c
  ||||||    |||  |||||| ||||||||||||||||||||  |||||      
  ugucgc    uac  ugacgg uagaagUCAAUAGUAUCAUG  CAUGa     c
ca      ----   cg      u                    -A     acuau 


Annotation confidence Not enough data
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Genome context
12: 15502016-15502123 [+]

Database links

Mature ola-miR-101b-5p

Accession MIMAT0022605
Description Oryzias latipes ola-miR-101b-5p mature miRNA
Sequence 28 - UCAGUUAUCAUGGUACCGGUGCU - 50
Evidence experimental
SOLiD [1]

Mature ola-miR-101b-3p

Accession MIMAT0022606
Description Oryzias latipes ola-miR-101b-3p mature miRNA
Sequence 64 - GUACAGUACUAUGAUAACU - 82
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8