miRBase entry: ola-mir-199a-3

Stem-loop ola-mir-199a-3


Accession
MI0019485
Description
Oryzias latipes ola-mir-199a-3 precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
2 open access papers mention ola-mir-199a-3
(2 sentences)

Sequence

uaccccuccccccaucccgccugCCCAGUGUUCAGACUACCUGUUcaggaaguagugguuguACAGUAGUCUGCACAUUGGUUAggcugguuagggaagugcg
.........(((...((.(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).))...))).......

Structure
uaccccucc   cau  c     C       U        C   U   gaag 
         ccc   cc gccug CCAGUGU CAGACUAC UGU cag    u
         |||   || ||||| ||||||| |||||||| ||| |||     
         ggg   gg cggAU GGUUACA GUCUGAUG ACA guu    a
--gcgugaa   auu  u     U       C        -   u   ggug 


Annotation confidence Not enough data
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Genome context
12: 11677445-11677547 [+]

Database links

Mature ola-miR-199a-5p

Accession MIMAT0022538
Description Oryzias latipes ola-miR-199a-5p mature miRNA
Sequence 24 - CCCAGUGUUCAGACUACCUGUU - 45
Evidence experimental
SOLiD [1]

Mature ola-miR-199a-3p

Accession MIMAT0022539
Description Oryzias latipes ola-miR-199a-3p mature miRNA
Sequence 63 - ACAGUAGUCUGCACAUUGGUUA - 84
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8