miRBase entry: ola-mir-205

Stem-loop ola-mir-205


Accession
MI0019453
Description
Oryzias latipes ola-mir-205 precursor miRNA
Gene family
MIPF0000058; mir-205

Literature search
1 open access papers mention ola-mir-205
(4 sentences)

Sequence

auguuuucuguccuucauuccaccggagucugugccuguauggaaccAGAUUUCAGUGGUGUGAAGUGUaaaagacaug
(((((((.((.(((((((.((((.((((((((..((.....))...)))))))).)))).)))))).))).))))))).

Structure
-       c  u -      u    c        -ug  u 
 auguuuu ug c cuucau ccac ggagucug   cc g
 ||||||| || | |||||| |||| ||||||||   || u
 uacagaa aU G GAAGUG GGUG CUUUAGAc   gg a
g       a  - U      U    A        caa  u 


Annotation confidence Not enough data
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Genome context
7: 22980091-22980169 [-]

Database links

Mature ola-miR-205

Accession MIMAT0022574
Description Oryzias latipes ola-miR-205 mature miRNA
Sequence 48 - AGAUUUCAGUGGUGUGAAGUGU - 69
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8