Stem-loop ola-mir-29b-1

Accession

MI0019446

Description

Oryzias latipes ola-mir-29b-1 precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

2 open access papers mention ola-mir-29b-1
(17 sentences)

Sequence

ucagacgugcccuccuuggaagcugguuucagaugguggcuuagagugcugucaucuaucUAGCACCAUUUGAAAUCAGUGUucuuggggugggaagugugg
.((.((.(.((((((..(((.(((((((((((((((((.((.(((..(.......)..)))))))))))))))))))))).)))..)))).)).).)).)).

Structure

u  g  g g  -    uu   a                 g  u   gu cu 
 ca ac u cc cucc  gga gcugguuucagauggug cu aga  g  g
 || || | || ||||  ||| ||||||||||||||||| || |||  |  u
 gu ug a gg gggg  cuU UGACUAAAGUUUACCAC GA Ucu  c  c
g  g  a g  u    uu   G                 -  -   au ua 

Annotation confidence Not enough data

Genome context

7: 23588373-23588474 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-29b-1

Mature ola-miR-29b

• Accession: MIMAT0022569
• Description: Oryzias latipes ola-miR-29b mature miRNA
• Sequence: 61 - UAGCACCAUUUGAAAUCAGUGU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8