miRBase entry: ola-mir-101a

Stem-loop ola-mir-101a


Accession
MI0019424
Description
Oryzias latipes ola-mir-101a precursor miRNA
Gene family
MIPF0000046; mir-101

Literature search
1 open access papers mention ola-mir-101a
(2 sentences)

Sequence

ugcuagauuugacaggcugcccugguUCAGUUAUCACAGUGCUGAUGCuguccccauagaagGUACAGUACUGUGAUAACUGAaggauggcugccaacuugacacaua
..............(((.(((....(((((((((((((((((((.((((.((......)).)))))))))))))))))))))))....))).))).............

Structure
ugcuagauuugaca   u   cugg                   A    g  cc 
              ggc gcc    uUCAGUUAUCACAGUGCUG UGCu uc  c
              ||| |||    ||||||||||||||||||| |||| ||   
              ccg cgg    aAGUCAAUAGUGUCAUGAC AUGg ag  a
-auacacaguucaa   u   uagg                   -    a  au 


Annotation confidence Not enough data
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Genome context
4: 16768335-16768442 [+]

Database links

Mature ola-miR-101a-5p

Accession MIMAT0022542
Description Oryzias latipes ola-miR-101a-5p mature miRNA
Sequence 27 - UCAGUUAUCACAGUGCUGAUGC - 48
Evidence experimental
SOLiD [1]

Mature ola-miR-101a-3p

Accession MIMAT0022543
Description Oryzias latipes ola-miR-101a-3p mature miRNA
Sequence 63 - GUACAGUACUGUGAUAACUGA - 83
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8