miRBase entry: ssl-MIR171b

Stem-loop ssl-MIR171b


Accession
MI0019347
Description
Salvia sclarea ssl-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

agcgauauuggugagguucaauccgaagacggauuuacugaugcagcuaguaaagugcgaucucagaUUGAGCCGCGCCAAUAUCACU
((.((((((((((.(((((((((.((.((((.((((((((.......)))).)))).)).)))).))))))))).)))))))))).))

Structure
  c          a         c  a  -  g    -    au 
ag gauauuggug gguucaauc ga ga cg auuu acug  g
|| |||||||||| ||||||||| || || || |||| ||||  c
UC CUAUAACCGC CCGAGUUag cu cu gc ugaa ugau  a
  A          G         a  -  a  g    a    cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssl-miR171b

Accession MIMAT0022513
Description Salvia sclarea ssl-miR171b mature miRNA
Sequence 68 - UUGAGCCGCGCCAAUAUCACU - 88
Evidence experimental
454 [1]

References

  1. PubMed ID: 19840835
    One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
    "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
    "Gene (2010) 450:55-62