Stem-loop ssl-MIR171a

Accession

MI0019346

Description

Salvia sclarea ssl-MIR171a precursor miRNA

Gene family

MIPF0000030; MIR171_1

Sequence

cgagauauuggugcgguucaauuugaaagccgugcucaauaggcuuagagcucgguuauuugaUUGAGCCGUGCCAAUAUCACG
...((((((((((((((((((((.((.(((((.((((..........)))).))))).)).))))))))))))))))))))...

Structure

cga                    u  a     u    aaua 
   gauauuggugcgguucaauu ga agccg gcuc    g
   |||||||||||||||||||| || ||||| ||||     
   CUAUAACCGUGCCGAGUUag uu uuggc cgag    g
GCA                    u  a     u    auuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR171a

• Accession: MIMAT0022512
• Description: Salvia sclarea ssl-miR171a mature miRNA
• Sequence: 64 - UUGAGCCGUGCCAAUAUCACG - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62