Stem-loop bra-MIR5712

Accession

MI0019323

Description

Brassica rapa bra-MIR5712 precursor miRNA

Literature search

2 open access papers mention bra-MIR5712
(2 sentences)

Sequence

guucacauuaagaaucucucaucaauuauauuaguauuuaaauagaaaguuucucaaaaacuuaagagaguuaugcgaggauagauuuuuacugagaauuuucuaucaaAAUAUUAAUAUAAUUGGUGAGagauucaugugg
...(((((...((((((((((((((((((((((((((((..((((((((((.((((..(((((....))))).....((((.....))))..))))))))))))))..))))))))))))))))))))))))))))))))).

Structure

guu     uaa                            aa          u    ------------------aa     a 
   cacau   gaaucucucaucaauuauauuaguauuu  auagaaaguu cuca                    aacuu a
   |||||   ||||||||||||||||||||||||||||  |||||||||| ||||                    |||||  
   gugua   cuuagaGAGUGGUUAAUAUAAUUAUAAa  uaucuuuuaa gagu                    uugag g
--g     ---                            ac          -    cauuuuuagauaggagcgua     a 

Annotation confidence Not enough data

Genome context

chrA1: 6456454-6456595 [+]

Mature bra-miR5712

• Accession: MIMAT0023009
• Description: Brassica rapa bra-miR5712 mature miRNA
• Sequence: 110 - AAUAUUAAUAUAAUUGGUGAG - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038