Stem-loop ath-MIR5645e

Accession

MI0019257

Description

Arabidopsis thaliana ath-MIR5645e precursor miRNA

Gene family

MIPF0001280; MIR5645

Sequence

uaaaugacaaaguuuauguugacuuuucAUUUGAGUCAUGUCGUUAAGuagguuaauauaauuauuucccggcguuaaguucucguuuaucuccucuauuagaacaaaacaacauuguuuauugcaucucguuuugucuguugaaacaaauuuaaacccuaaauccccaaaucgauuucauuaucugcgauuuugaggucagguggguuugugauuuugagauaaugaaaucgauauagggauuuaagguuuauauuuguuucaagagacaaaacgacgucguuuugugucuucaauaaacgacauuguuuguucuaacagaucaaauaaacaagucauuaaagccguaaaaaaaauuauauuaaccuauuuaacgauaggacucaaauggcaagucaacaaaaacuuugucauuua
(((((((((((((((.(((((((((.(((((((((((.(((((((((((((((((((((((((.(((..((((.((((...((.((((((....(((.((((((((((.(((...(((.....)))..(((((((((((.(((((((((((.((((((.((((((((...((((((((((((((((.......((((((((.(......).))))))))))))))))))))))))...)))))))).)))))).))))))))))).))))))))))).(((((((..((....))..))))))).))))))))))))).)))....)))))).))...)))).))))..)))..))))))))))))))))))))))))).))))))))))).))))))))).)))))))))))))))

Structure

               a         u           A                         -a   cc    g    guu  c      cucc   a          a   ------------cauuguuuauugcauc           g           u      c        caa                gcgauuu        g ug 
uaaaugacaaaguuu uguugacuu ucAUUUGAGUC UGUCGUUAAGuagguuaauauaauu  uuu  cggc uuaa   cu guuuau    ucu uuagaacaaa caa                            ucguuuugucu uugaaacaaau uaaacc uaaauccc   aucgauuucauuaucu       ugagguca g  g
||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||  |||  |||| ||||   || ||||||    ||| |||||||||| |||                            ||||||||||| ||||||||||| |||||| ||||||||   ||||||||||||||||       |||||||| |   
auuuacuguuucaaa acaacugaa gguaaacucag auagcaauuuauccaauuauauuaa  aaa  gccg aauu   ga caaaua    aga aaucuuguuu guu                            agcaaaacaga aacuuuguuua auuugg auuuaggg   uagcuaaaguaauaga       guuuuagu u  g
               a         c           g                         aa   au    a    acu  a      aacu   c          -   acagcaaauaacuucuguguuuugcugc           g           u      a        aua                -------        g uu 

Annotation confidence Not enough data

Genome context

chr4: 5321227-5321643 [+]

Mature ath-miR5645e

• Accession: MIMAT0022446
• Description: Arabidopsis thaliana ath-miR5645e mature miRNA
• Sequence: 29 - AUUUGAGUCAUGUCGUUAAG - 48
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176