miRBase entry: ath-MIR5664

Stem-loop ath-MIR5664


Accession
MI0019253
Description
Arabidopsis thaliana ath-MIR5664 precursor miRNA


Sequence

uugucgucuaugaugaauAUAGUCAAUUUUAUCGGUCUGcaauaggcaaauaaaacaugcaauuacuuuggucacggacaaauuauuuuuauggcuauugagaccaucuuuaaguaauaaauaaaaaauacgauuauccacgaacaaaguaaucaucuguuuuauuugccuauuguagaccgauaaaagugacuauauauaucauagacgacau
.((((((((((((((.(((((((((.(((((((((((((((((((((((((((((((....(((((((((.((..(((.....(((((((((((((....)).))))................)))))))......)))..)).)))))))))....))))))))))))))))))))))))))))))).))))))))).)))))))))))))).

Structure
u              a         A                               ugca         g  ac   -caaau       ----------------    -  a 
 ugucgucuaugaug auAUAGUCA UUUUAUCGGUCUGcaauaggcaaauaaaaca    auuacuuug uc  gga      uauuuuu                augg cu u
 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||| ||  |||      |||||||                |||| ||  
 acagcagauacuau uauaucagu aaaauagccagauguuauccguuuauuuugu    uaaugaaac ag  ccu      auaaaaa                uacc ga u
u              a         g                               cuac         a  ca   auuagc       auaaauaaugaauuuc    a  g 


Annotation confidence Not enough data
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Genome context
chr1: 17386795-17387008 [+]

Database links

Mature ath-miR5664

Accession MIMAT0022442
Description Arabidopsis thaliana ath-miR5664 mature miRNA
Sequence 19 - AUAGUCAAUUUUAUCGGUCUG - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176