miRBase entry: ath-MIR1888b

Stem-loop ath-MIR1888b


Accession
MI0019247
Description
Arabidopsis thaliana ath-MIR1888b precursor miRNA
Gene family
MIPF0001333; MIR1888

Literature search
1 open access papers mention ath-MIR1888b
(1 sentences)

Sequence

uauuggugguaucuuacccaaauucUUAGGCUAAGAUUUGUGAAGAaaaggcucuuauauaagagcuuuuacucuuauauuuaaguuuuuucuucccaaaucuuagauuaagauuuggcuaagauaccacuaaua
((((((((((((((((.((((((.((((..((((((((((.((((((((((((...(((((((((......)))))))))...)))))))))))).))))))))))..)))))))))).))))))))))))))))

Structure
                c      u    GG          U            cuu         cu 
uauuggugguaucuua ccaaau cUUA  CUAAGAUUUG GAAGAaaaggcu   auauaagag  u
|||||||||||||||| |||||| ||||  |||||||||| ||||||||||||   |||||||||   
auaaucaccauagaau gguuua gaau  gauucuaaac cuucuuuuuuga   uauauucuc  u
                c      -    ua          c            auu         au 


Annotation confidence Not enough data
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Genome context
chr3: 22537283-22537417 [+]

Database links

Mature ath-miR1888b

Accession MIMAT0022436
Description Arabidopsis thaliana ath-miR1888b mature miRNA
Sequence 26 - UUAGGCUAAGAUUUGUGAAGA - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176