Stem-loop sequence ath-MIR5642b

Accession

MI0019246 (change log)

Description

Arabidopsis thaliana miR5642b stem-loop

Gene family

MIPF0001347; MIR5642

Literature search

1 open access papers mention ath-MIR5642b
(2 sentences)

Stem-loop

   --------------------------------------------------------------------------------------------------cauggauccgccuaggcugucccgagugugagcgaggugugagugucgcccaugggcaucgacaccuugcg         uggaa  ag    gua  a  ga     a u     u   u  --u  -  -u     u 
5'                                                                                                                                                                          gcuaggaac     cg  acgg   gc aa  uuucg g agcac uca ac   ac cg  ggguu u
                                                                                                                                                                            |||||||||     ||  ||||   || ||  ||||| | ||||| ||| ||   || ||  ||||| u
3'                                                                                                                                                                          cgguucuug     gc  ugcc   cg uu  agagc c uugug agu ug   ug gc  uccaa u
   gcuuagguucgguuucggcauguucgcgcucuauggaagcccugucggauccgccuagguacgaaagguugcuucgugcggguagguuggauccgcucuguucccaaguguaaagcaaguagugggaaccggccgaaagcuugucggccugaggguaguuuucuaccaa         uagaa  aa    aaa  a  -a     - u     u   -  uuu  a  cu     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr2: 2805-3176 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007AB642_3702
• miRBase Tracker:MI0019246

Mature sequence ath-miR5642b

• Accession: MIMAT0022435
• Sequence: 341 - ucucgcgcuuguacggcuuu - 360
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).