Stem-loop ath-MIR5660

Accession

MI0019245

Description

Arabidopsis thaliana ath-MIR5660 precursor miRNA

Sequence

uuugacauaauaguuuucugguaacuuucagaccaaggccaaaccgaauuguCAGGUGGUUAGUGCAAUGGAAagcuggcaaaccguaugaguauaccaucuuguaguacucuuuaccagcuuuccaaugcacuaacgaucugacaauuccguucagccguuuuugucggaaaguuaccggaaaacuauuauguu
...((((((((((((((((((((((((((.(((...(((..(((.((((((((((((.(((((((((.(((((((((((.(((......((((((((......)).))))))))).))))))))))).))))))))).)))))))))))).)))..)))......))).))))))))))))))))))))))))))

Structure

uuu                          a   ---caa   ca   c            G         A           c   ccguau      -  ca 
   gacauaauaguuuucugguaacuuuc gac      ggc  aac gaauuguCAGGU GUUAGUGCA UGGAAagcugg aaa      gaguau ac  u
   |||||||||||||||||||||||||| |||      |||  ||| |||||||||||| ||||||||| ||||||||||| |||      |||||| ||   
   uuguauuaucaaaaggccauugaaag cug      ccg  uug cuuaacagucua caaucacgu accuuucgacc uuu      cucaug ug  c
---                          g   uuuuug   ac   c            g         a           a   ------      a  uu 

Annotation confidence Not enough data

Genome context

chr4: 5292626-5292820 [-]

Mature ath-miR5660

• Accession: MIMAT0022434
• Description: Arabidopsis thaliana ath-miR5660 mature miRNA
• Sequence: 53 - CAGGUGGUUAGUGCAAUGGAA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176