miRBase entry: ath-MIR5653

Stem-loop ath-MIR5653


Accession
MI0019236
Description
Arabidopsis thaliana ath-MIR5653 precursor miRNA


Sequence

cccaauaacucauuugacccaucaacucauuugagucaaaaaauuuaacucauuaggguucaUGGGUUGAGUUGAGUUGAGUUGGC
.(((((((((((((((((((((.(((((...(((((.(((...))).)))))...))))).)))))))))).))))))..))))).

Structure
c     --      -          c     auu     c   a 
 ccaau  aacuca uuugacccau aacuc   ugagu aaa  
 |||||  |||||| |||||||||| |||||   ||||| ||| a
 GGUUG  UUGAGU GAGUUGGGUa uuggg   acuca uuu  
C     AG      U          c     auu     a   a 


Annotation confidence Not enough data
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Genome context
chr1: 19026915-19027000 [-]

Database links

Mature ath-miR5653

Accession MIMAT0022425
Description Arabidopsis thaliana ath-miR5653 mature miRNA
Sequence 63 - UGGGUUGAGUUGAGUUGAGUUGGC - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176