miRBase entry: ath-MIR5651

Stem-loop ath-MIR5651


Accession
MI0019233
Description
Arabidopsis thaliana ath-MIR5651 precursor miRNA


Sequence

uggcuccgaauggagacgugcaguucaacugcggauaaagugUUGUGCGGUUCAAAUAGUAACaaaaauauauacauacauauauauguaaagaauuucguuacuauuugaaucguacugcacuguacgguucggucaccauucgaagccuauaucacuacc
.((((.(((((((.(((..(((((...)))))((((..(((((.(((((((((((((((((((.(((.....((((((......)))))).....))).))))))))))))))))))).))))).....)))).))).))))))).))))............

Structure
-----------u    c       a   gugcaguucaacugc    ---aa     U                   a   auaua      ca 
            ggcu cgaaugg gac               ggau     agugU GUGCGGUUCAAAUAGUAAC aaa     uacaua  u
            |||| ||||||| |||               ||||     ||||| ||||||||||||||||||| |||     ||||||   
            ccga gcuuacc cug               cuug     ucacg caugcuaaguuuaucauug uuu     auguau  a
ccaucacuauau    a       a   --------------g    gcaug     u                   c   aagaa      au 


Annotation confidence Not enough data
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Genome context
chr3: 17178447-17178608 [+]

Database links

Mature ath-miR5651

Accession MIMAT0022422
Description Arabidopsis thaliana ath-miR5651 mature miRNA
Sequence 43 - UUGUGCGGUUCAAAUAGUAAC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176