Stem-loop sequence ath-MIR781b

Accession

MI0019231 (change log)

Description

Arabidopsis thaliana miR781b stem-loop

Gene family

MIPF0001137; MIR781

Literature search

2 open access papers mention ath-MIR781b
(2 sentences)

Stem-loop

   au                     aa     auau      ag 
5'   uuagaguuuucuggauacuua  aguua    cgaaga  c
     |||||||||||||||||||||  |||||    ||||||  c
3'   aaucucaaaagaccuaugaau  ucaau    guuucu  c
   uu                     aa     gauu      cu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 7423521-7423607 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR781b

• ath-MIR781b: chr1: 7423521-7423607 [-]
• ath-MIR781a: chr1: 7423518-7423611 [+]

Database links

• miRBase Tracker:MI0019231

Mature sequence ath-miR781b

• Accession: MIMAT0022420
• Sequence: 3 - uuagaguuuucuggauacuua - 23
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).