Stem-loop sequence ath-MIR858b

Accession

MI0019228 (change log)

Description

Arabidopsis thaliana miR858b stem-loop

Gene family

MIPF0001138; MIR858

Literature search

4 open access papers mention ath-MIR858b
(7 sentences)

Stem-loop

   ccuac    ag    uu  -a          -a    caaacauagaggugugaguuugguuugguuuuggguuuugggggguugguaguguuugagguccauaugccucgaucuuccgcuucuauuaauuaauuuucucuauuagaaauauua 
5'      ccga  gguu  gg  gaguagacaa  gaga                                                                                                                     u
        ||||  ||||  ||  ||||||||||  ||||                                                                                                                     c
3'      gguu  ucgg  cc  cuugucuguu  uucu                                                                                                                     u
   ----c    --    uu  ag          gc    auucuaccuuggucuagcccugacgaggaaacuguucacaaacgugacuuaaguuuuugaaacuacccgaauauguauaguaauauauacacguaccaagcuaccucaccuuauuaa 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 26772633-26772935 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR858b

• ath-MIR858b: chr1: 26772633-26772935 [+]
• ath-MIR858a: chr1: 26773539-26773725 [-]

Database links

• miRBase Tracker:MI0019228

Mature sequence ath-miR858b

• Accession: MIMAT0022417
• Sequence: 275 - uucguugucuguucgaccuug - 295
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).