Stem-loop ath-MIR5645c

Accession

MI0019225

Description

Arabidopsis thaliana ath-MIR5645c precursor miRNA

Gene family

MIPF0001280; MIR5645

Sequence

cccauuugagucauguuguuaaauagguuaauagaauuuuuuacgacguuaauguuccguuuaucugcucuguuagaacaaaacaaugucguuuauuacagagacaaacgacgucguuuuaucuguugaaacaaauuuuaaacccuaaauccccaaaucgauuucauuaucucaaauccuauagaggccgaaucgauuugaaucccaucuggugaggagacaaacaauguuccucagcccaaaucaaaucgaaaaaaaaaaagaaaaaacggaagaaggaaguugaaguagaugacaucguuuuguuuuaauagagaaaauaaacgagacauuaacgccguaaaauauuuuugauAACCUAUUUAACGACAUGACUgaaauggc
.((((((.((((((((((((((((((((((..(((((.(((((((.((((((((((.(((((((...(((((((((((((((((.(((((((((((((((((...(((((....)))))..))))).................(((...(((.(((((((((((.....((((..........))))..))))))))))).........((((((((((.((.....)))))))))..))).............................)))...))).......)))))))))))).)))))))))))))))))...))))))).)))))))))).))))))).)))))...)))))))))))))))))))))).)))))).

Structure

c      g                      -au     u       a          c       cug                 a            acagagacaaacgacgucguuuuaucuguugaaacaaauuuuaaac   aaa   ---------------------------------------------------------------------c           cauua    aaau 
 ccauuu agucauguuguuaaauagguua   agaau uuuuacg cguuaauguu cguuuau   cucuguuagaacaaaac augucguuuauu                                              ccu   ucc                                                                      caaaucgauuu     ucuc    c
 |||||| ||||||||||||||||||||||   ||||| ||||||| |||||||||| |||||||   ||||||||||||||||| ||||||||||||                                              |||   |||                                                                      |||||||||||     ||||     
 gguaaa UCAGUACAGCAAUUUAUCCAAu   uuuua aaaaugc gcaauuacag gcaaaua   gagauaauuuuguuuug uacaguagauga                                              gga   agg                                                                      guuuagcuaag     ggag    c
c      g                      agu     u       c          a       aaa                 c            ---------------------------------------aguugaa   aga   caaaaaagaaaaaaaaaaagcuaaacuaaacccgacuccuuguaacaaacagaggaguggucuacccuaa           ---cc    auau 

Annotation confidence Not enough data

Genome context

chr3: 14742421-14742804 [+]

Mature ath-miR5645c

• Accession: MIMAT0022414
• Description: Arabidopsis thaliana ath-miR5645c mature miRNA
• Sequence: 356 - AACCUAUUUAACGACAUGACU - 376
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176