miRBase entry: ath-MIR5646

Stem-loop ath-MIR5646


Accession
MI0019222
Description
Arabidopsis thaliana ath-MIR5646 precursor miRNA


Sequence

caucaccaacgagcuauuggcccaauacuaaaucuccguggaggugauagGUUCGAGGCACGUUGGGAGG
..((.((((((.(((.((((.((........(((((....)))))....)).))))))).))))))))..

Structure
ca  a      a   a    c  aauacuaa     c 
  uc ccaacg gcu uugg cc        aucuc g
  || |||||| ||| |||| ||        |||||  
  AG GGUUGC CGG AGCU Gg        uggag u
GG  -      A   -    U  ----auag     g 


Annotation confidence Not enough data
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Genome context
chr2: 3517383-3517452 [-]

Database links

Mature ath-miR5646

Accession MIMAT0022410
Description Arabidopsis thaliana ath-miR5646 mature miRNA
Sequence 51 - GUUCGAGGCACGUUGGGAGG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176