Stem-loop ath-MIR5645a

Accession

MI0019220

Description

Arabidopsis thaliana ath-MIR5645a precursor miRNA

Gene family

MIPF0001280; MIR5645

Sequence

uuguugacuuucgaaauaaauaacaaaguuuuuguugacuugucAUUUGAGUCAUGUCGUUAAGuagguuaacaaaaaaaauuuacggcguuaaugucuccuuuaucuccucuguuagaacaaaaaaacguuguuuauugcaguucguuuugucuguugacacaaauuuaaacccuaaauccccaaaucgauuuuauuaucugcgauuuugaagucaaugugggucugugauuuugagauaauaaaaucgauuuggagauuuaggguuuauauuuguuucaagagacaaaacaacguuguuuugucucuucaauaaacgacguuguuuuguucuaacagaucaaauaaacauuaacaccguaaaaaaauucucuuaaccuauuuaacgauaugacucaaauggcaagucaacaaaaacuuugucauuuauuucgaaaguuaacaa
.((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((.........(((((((.((((((((.....((((....(((((((((((((((.((((((((((((((..(((.(((((((((.((((.((((((.(((((((((((((.((((((((((((((((((((.(((..((..((((......)).))..))..))))))))))))))))))))))).))))))))))))).)))))).)))).))))))))))))...............)))))))))))))).)))))))))))))))....)))))))))))).))))))).........)))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))).

Structure

u                    a                                                  caaaaaaaa       c        cuccu    cucc               a              -------------ca   c         g    c      u             c                    g   uu  ga  -  aa 
 uguugacuuucgaaauaaau acaaaguuuuuguugacuugucAUUUGAGUCAUGUCGUUAAGuagguuaa         uuuacgg guuaaugu     uuau    ucuguuagaacaaaa aacguuguuuauug               guu guuuugucu uuga acaaau uaaacccuaaauc ccaaaucgauuuuauuaucu cga  uu  ag uc  u
 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||| ||||||||     ||||    ||||||||||||||| ||||||||||||||               ||| ||||||||| |||| |||||| ||||||||||||| |||||||||||||||||||| |||  ||  || ||   
 acaauugaaagcuuuauuua uguuucaaaaacaacugaacgguaaacucaguauagcaauuuauccaauu         aaaugcc caauuaca     aaua    agacaaucuuguuuu uugcagcaaauaac               caa caaaacaga aacu uguuua auuugggauuuag gguuuagcuaaaauaauaga guu  ag  uc gg  g
a                    c                                                  cucuuaaaa       a        -----    aacu               g              uucucuguuuuguug   -         g    u      u             a                    -   uu  ug  u  gu 

Annotation confidence Not enough data

Genome context

chr3: 17418776-17419220 [+]

Mature ath-miR5645a

• Accession: MIMAT0022408
• Description: Arabidopsis thaliana ath-miR5645a mature miRNA
• Sequence: 45 - AUUUGAGUCAUGUCGUUAAG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176