Stem-loop sequence ath-MIR5635d

Accession

MI0019217 (change log)

Description

Arabidopsis thaliana miR5635d stem-loop

Gene family

MIPF0001283; MIR5635

Literature search

1 open access papers mention ath-MIR5635d
(1 sentences)

Stem-loop

   a                  c     g           a         c        a                  u           guaacuaacaacuguuuuuguccuuaaacca 
5'  guugacuucuaauuuaac uauaa uuaucguugac cggccaaau gacucacc uuaacacuucuuaacagc cuccuaacagc                               a
    |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||||||                                
3'  caacugaagauuaaauug auauu aauagcaacug gucgguuua cugagugg aauugugaggaauugucg gaggauugucg                               c
   a                  u     a           g         u        c                  c           gcaauguuuuguaccggauugucggcaauag 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 1023912-1024149 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000079860D_3702
• miRBase Tracker:MI0019217

Mature sequence ath-miR5635d

• Accession: MIMAT0022405
• Sequence: 166 - uguuaaggaguguuaacggug - 186
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).