Stem-loop sequence ath-MIR5642a

Accession

MI0019215 (change log)

Description

Arabidopsis thaliana miR5642a stem-loop

Gene family

MIPF0001347; MIR5642

Literature search

2 open access papers mention ath-MIR5642a
(7 sentences)

Stem-loop

   --------------------------------------------------------------------------------------------------cauggauccgccuaggcugucccgagugugagcgaggugugagugucgcccaugggcaucgacaccuugcg         uggaa  ag    gua  a  ga     -       - uu  -u    -ccgu     u 
5'                                                                                                                                                                          gcuaggaac     cg  acgg   gc aa  uuucg aguagca c  ca  acua     ggguu u
                                                                                                                                                                            |||||||||     ||  ||||   || ||  ||||| ||||||| |  ||  ||||     ||||| u
3'                                                                                                                                                                          cgguucuug     gc  ugcc   cg uu  agagc uuauugu g  gu  ugau     uccaa u
   gcuuaggcucgguuucggcauguucgcgcucuauggaagcccugucggauccgccuagguacgaaagguugcuucgugcggguagguuggauccgcucuguucccaaguguaaagcaaguagugggaaccggccgaaagcuugucggccugaggguaguuuucuaccaa         uagaa  aa    aaa  a  -a     c       a uu  uu    ccccu     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr3: 14196774-14197147 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000796B91_3702
• miRBase Tracker:MI0019215

Mature sequence ath-miR5642a

• Accession: MIMAT0022403
• Sequence: 343 - ucucgcgcuuguacggcuuu - 362
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).