miRBase entry: ath-MIR5639

Stem-loop ath-MIR5639


Accession
MI0019212
Description
Arabidopsis thaliana ath-MIR5639 precursor miRNA


Sequence

agUAGUCCACUGUGGUCUAAGGCugaaaugcggugaccagacuagaaaacaugucaauggugguccuugugaaaggguugacaaagaagucuagggagacggugacacgucggaucucuggccuaugugagugcuaaaacaauuaugguauugguugcuuaaaggugucauauugccacuacgacuuugagaauggugaaugguuguggcaauaugacuuuaagcagccaauaauauaaucuuuuuagcacugaugguggcuagagaaccggcaugccacugucuccguagauuuuuuuugucaacccuuuugcaagucccaccauugaucaauuuuccgagcgggucaccguauUUUAGCCUCAGACCACGGUGGACUacu
((((((((((((((((((.(((((((((((((((((((.(.((.(((((...(((((((((((..((((((((((((((((((((((((((((.((((((((((.((.(((((.(((((((((..(((.((((((((((..((((((.(((((((((((((((...(((((((((((((.((....................)).)))))))))))))))))))))))))))).))))))..)))))))))).)))..))))))))).))))).)).)))))))))).)))).))))))))))))))))))))))))..)))))))))))...)))))..))).))))))))))))))))))).))))))))))))))))))

Structure
                  A                   a a  -a     cau           uc                        -    g          a  c     a         ua   g          ca      g               ggu             u  gacuuugag 
agUAGUCCACUGUGGUCU AGGCugaaaugcggugacc g cu  gaaaa   gucaauggugg  cuugugaaaggguugacaaagaag ucua ggagacggug ca gucgg ucucuggcc  ugu agugcuaaaa  auuaug uauugguugcuuaaa   gucauauugccac ac         a
|||||||||||||||||| ||||||||||||||||||| | ||  |||||   |||||||||||  |||||||||||||||||||||||| |||| |||||||||| || ||||| |||||||||  ||| ||||||||||  |||||| |||||||||||||||   ||||||||||||| ||          
ucaUCAGGUGGCACCAGA UCCGAUUUuaugccacugg c ga  cuuuu   uaguuaccacc  gaacguuuucccaacuguuuuuuu agau ccucugucac gu cggcc agagaucgg  gua ucacgauuuu  uaauau auaaccgacgaauuu   caguauaacggug ug         a
                  C                   g -  gc     aac           cu                        u    g          c  a     a         ug   g          uc      a               ---             u  guaaguggu 


Annotation confidence Not enough data
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Genome context
chr2: 10356782-10357163 [+]

Database links

Mature ath-miR5639-5p

Accession MIMAT0022400
Description Arabidopsis thaliana ath-miR5639-5p mature miRNA
Sequence 3 - UAGUCCACUGUGGUCUAAGGC - 23
Evidence experimental
Illumina [1]

Mature ath-miR5639-3p

Accession MIMAT0032128
Description Arabidopsis thaliana ath-miR5639-3p mature miRNA
Sequence 356 - UUUAGCCUCAGACCACGGUGGACU - 379
Evidence not_experimental

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176