miRBase entry: ath-MIR5637

Stem-loop ath-MIR5637


Accession
MI0019209
Description
Arabidopsis thaliana ath-MIR5637 precursor miRNA


Sequence

aagaccaucuccAAUGCGCAACUCUAUAUUUCCucuauuuuacaguugacucuauaaaauauaguugauuuuacugcauuguaugccucuaaaauagaggaaaaauguagagauugcucuuuuauuagcucaacuauauauucucuaaacucuaaaauagaggaaaauauagaguugggcauuugagaugcucua
.(((.((((((.(((((.((((((((((((((((((((((((.((((......(((...(((((((((.....(((((((.....((((((...))))))...))))))).....(((........)))))))))))))))......)))).))))))))))).))))))))))))).))))).)))))).))).

Structure
a   c      c     G             -           c    gacucu   aaa         --------------uuuua       guaug      a 
 aga caucuc AAUGC CAACUCUAUAUUU CCucuauuuua aguu      aua   uauaguuga                   cugcauu     ccucua  
 ||| |||||| ||||| ||||||||||||| ||||||||||| ||||      |||   |||||||||                   |||||||     |||||| a
 ucu guagag uuacg guugagauauaaa ggagauaaaau ucaa      uau   auaucaacu                   gauguaa     ggagau  
a   c      u     g             a           c    aucucu   ---         cgauuauuuucucguuaga       --aaa      a 


Annotation confidence Not enough data
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Genome context
chr2: 12270179-12270373 [-]

Database links

Mature ath-miR5637

Accession MIMAT0022397
Description Arabidopsis thaliana ath-miR5637 mature miRNA
Sequence 13 - AAUGCGCAACUCUAUAUUUCC - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176