Stem-loop ath-MIR5634

Accession

MI0019206

Description

Arabidopsis thaliana ath-MIR5634 precursor miRNA

Sequence

ugAGGGACUUUGUGAAUUUAGGGauuuuauuauagcgguggcuggcugaugagcgacuuugugaauuuagggucugucugucaauuuggcgggcuguccaugggccaagcgucuuucgcagguuuuugggcccaagccuacuaagugccagguccagcccauuaagauccuauaucaaagauagggcacaauuguaguaaccacccuaauuucacaaagucucuca
((((((((((((((((.((((((...(((((((((..((((((((((.(((.(((((((((......))))))).((((((((...)))))))).)).))).)))).)))(((((.....(((...((((((...((((....)).))..)))))))))....)))))(((((.......))))).)))..)))))))))...)))))).))))))))))))))))

Structure

                U      auu         cg   gcuggcugaugagcgacuuugugaauuuagggucugucugucaauuuggcgggcuguccaugggccaagc     ucgca   uuu      caa  -  a 
ugAGGGACUUUGUGAA UUAGGG   uuauuauag  gug                                                                      gucuu     ggu   ugggcc   gc cu c
|||||||||||||||| ||||||   |||||||||  |||                                                                      |||||     |||   ||||||   || ||  
acucucugaaacacuu aauccc   aaugauguu  cac                                                                      uagaa     ccg   accugg   cg ga u
                u      acc         aa   ----------------------------------------------------gggauagaaacuauaucc     -uuac   ---      -ac  u  a 

Annotation confidence Not enough data

Genome context

chr4: 14982320-14982545 [+]

Mature ath-miR5634

• Accession: MIMAT0022394
• Description: Arabidopsis thaliana ath-miR5634 mature miRNA
• Sequence: 3 - AGGGACUUUGUGAAUUUAGGG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176