miRBase entry: mmu-mir-5627

Stem-loop mmu-mir-5627


Accession
MI0019198
Symbol
MGI: Mir5627
Description
Mus musculus mmu-mir-5627 precursor miRNA

Literature search
1 open access papers mention mmu-mir-5627
(2 sentences)

Sequence

62 reads, 7 reads per million, 37 experiments
AGAGGGUGCGCCGGGCCCUGCGuccccgcccuagaggACAGGGCUCUCCGGCGCCCCUCGU
.(((((.((((((((((((..((((.(......).)))))))))...))))))))))))..

Structure
-A     U       ---     GC    c gc 
  GAGGG GCGCCGG   GCCCU  Gucc c  c
  ||||| |||||||   |||||  |||| |   
  CUCCC CGCGGCC   CGGGA  CAgg g  c
UG     -       UCU     --    a au 


Annotation confidence Not enough data
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Genome context
chr12: 44210313-44210373 [+]

Database links

Mature mmu-miR-5627-5p

Accession MIMAT0022385
Description Mus musculus mmu-miR-5627-5p mature miRNA
Sequence 1 - AGAGGGUGCGCCGGGCCCUGCG - 22
Evidence not_experimental

Mature mmu-miR-5627-3p

Accession MIMAT0022386
Description Mus musculus mmu-miR-5627-3p mature miRNA
Sequence 38 - ACAGGGCUCUCCGGCGCCCCUCGU - 61
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52