miRBase entry: cin-mir-5610

Stem-loop cin-mir-5610


Accession
MI0019176
Description
Ciona intestinalis cin-mir-5610 precursor miRNA


Sequence

16 reads, 3 reads per million, 2 experiments
AAUAAUUAGCAUCAUCAGUCUcuaauuuauauauaauauacagcacagACUGUUGAUGUGAGUUAUUGA
(((((((.((((((.((((((......(((((...)))))......)))))).)))))).)))))))..

Structure
--       A      U      cuaauu     a 
  AAUAAUU GCAUCA CAGUCU      uauau  
  ||||||| |||||| ||||||      ||||| u
  UUAUUGA UGUAGU GUCAga      auaua  
AG       G      U      cacgac     a 


Annotation confidence Not enough data
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Genome context
9p: 27347-27415 [+]

Database links

Mature cin-miR-5610-5p

Accession MIMAT0022347
Description Ciona intestinalis cin-miR-5610-5p mature miRNA
Sequence 1 - AAUAAUUAGCAUCAUCAGUCU - 21
Evidence not_experimental

Mature cin-miR-5610-3p

Accession MIMAT0022348
Description Ciona intestinalis cin-miR-5610-3p mature miRNA
Sequence 49 - ACUGUUGAUGUGAGUUAUUGA - 69
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52