miRBase entry: cin-mir-4179b

Stem-loop cin-mir-4179b


Accession
MI0019170
Description
Ciona intestinalis cin-mir-4179b precursor miRNA


Sequence

4 reads, 3 reads per million, 2 experiments
UUAUCUGGUAUAAAAAGUUUUGccggauagcagacaaaaagucggaaauacaUUACGUUUUAUACCAGAUGAGC
(((((((((((((((.((..((((((...............)))).....))..)).)))))))))))))))..

Structure
--               A  UU  -----    auagca 
  UUAUCUGGUAUAAAA GU  UG     ccgg      g
  ||||||||||||||| ||  ||     ||||      a
  AGUAGACCAUAUUUU CA  ac     ggcu      c
CG               G  UU  auaaa    gaaaaa 


Annotation confidence Not enough data
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Genome context
4q: 6025879-6025952 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4179b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4179b-5p

Accession MIMAT0022335
Description Ciona intestinalis cin-miR-4179b-5p mature miRNA
Sequence 1 - UUAUCUGGUAUAAAAAGUUUUG - 22
Evidence not_experimental

Mature cin-miR-4179b-3p

Accession MIMAT0022336
Description Ciona intestinalis cin-miR-4179b-3p mature miRNA
Sequence 53 - UUACGUUUUAUACCAGAUGAGC - 74
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52