miRBase entry: cin-mir-5603

Stem-loop cin-mir-5603


Accession
MI0019168
Description
Ciona intestinalis cin-mir-5603 precursor miRNA


Sequence

92 reads, 28 reads per million, 2 experiments
UUAUGAUGCCUAAUUUGUAGAUGAcgcugaccgaaucgcuccugUAAUAUCUUCAAGGCGCAUCGUAAA
(((((((((....((((.(((((..((.((.((...)).))..))..))))).))))..))))))))).

Structure
-         CUAA    U     Ac  -u  c  a 
 UUAUGAUGC    UUUG AGAUG  gc  ga cg  
 |||||||||    |||| |||||  ||  || || a
 AAUGCUACG    GAAC UCUAU  Ug  cu gc  
A         --CG    U     AA  uc  c  u 


Annotation confidence Not enough data
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Genome context
scaffold_1895: 2490-2558 [-]

Database links

Mature cin-miR-5603-5p

Accession MIMAT0022331
Description Ciona intestinalis cin-miR-5603-5p mature miRNA
Sequence 1 - UUAUGAUGCCUAAUUUGUAGAUGA - 24
Evidence not_experimental

Mature cin-miR-5603-3p

Accession MIMAT0022332
Description Ciona intestinalis cin-miR-5603-3p mature miRNA
Sequence 45 - UAAUAUCUUCAAGGCGCAUCGUAAA - 69
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52