miRBase entry: cin-mir-5600

Stem-loop cin-mir-5600


Accession
MI0019164
Description
Ciona intestinalis cin-mir-5600 precursor miRNA


Sequence

120 reads, 44 reads per million, 2 experiments
UCGAAACCAAAAUACUCCAGUUUgaucccggucaacuuacacaaAGUGGAAUGUUUUGUUUCGAAC
(((((((.((((((.((((.((((.....(.....).....)))).)))).)))))))))))))..

Structure
--       C      C    G    auccc g 
  UCGAAAC AAAAUA UCCA UUUg     g u
  ||||||| |||||| |||| ||||     | c
  AGCUUUG UUUUGU AGGU Aaac     c a
CA       -      A    G    acauu a 


Annotation confidence Not enough data
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Genome context
7q: 2660071-2660136 [+]

Database links

Mature cin-miR-5600-5p

Accession MIMAT0022323
Description Ciona intestinalis cin-miR-5600-5p mature miRNA
Sequence 1 - UCGAAACCAAAAUACUCCAGUUU - 23
Evidence not_experimental

Mature cin-miR-5600-3p

Accession MIMAT0022324
Description Ciona intestinalis cin-miR-5600-3p mature miRNA
Sequence 45 - AGUGGAAUGUUUUGUUUCGAAC - 66
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52