miRBase entry: cel-mir-356b

Stem-loop cel-mir-356b


Accession
MI0019158
Description
Caenorhabditis elegans cel-mir-356b precursor miRNA

Literature search
2 open access papers mention cel-mir-356b
(3 sentences)

Sequence

215 reads, 15 reads per million, 13 experiments
UGGUGAGACACGUCGUAACGAAUccgcugaaauuuacauugaugaUUUGUUCGCGUUGCUCAACCACA
(((((((..(((.((.((((((((..(.............)..)))))))))))))..))).))))..

Structure
--    -   AC   U  U        cg ugaaa 
  UGGU GAG  ACG CG AACGAAUc  c     u
  |||| |||  ||| || ||||||||  |     u
  ACCA CUC  UGC GC UUGUUUag  g     u
AC    A   GU   -  -        ua uuaca 


Annotation confidence High
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Genome context
chrIII: 7860167-7860234 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-356b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-356b-5p

Accession MIMAT0022311
Description Caenorhabditis elegans cel-miR-356b-5p mature miRNA
Sequence 1 - UGGUGAGACACGUCGUAACGAAU - 23
Evidence not_experimental
Database links

Mature cel-miR-356b-3p

Accession MIMAT0022312
Description Caenorhabditis elegans cel-miR-356b-3p mature miRNA
Sequence 46 - UUUGUUCGCGUUGCUCAACCACA - 68
Evidence not_experimental
Database links

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52