miRBase entry: cel-mir-5593-2

Stem-loop cel-mir-5593-2


Accession
MI0019156
Description
Caenorhabditis elegans cel-mir-5593-2 precursor miRNA
Gene family
MIPF0001336; mir-5593


Sequence

412 reads, 6 reads per million, 15 experiments
GAUGGCUGGAAUAUCGGUAUUCucggcugaaacaugcacuaaAUACCGCAUUCCAACCAACAA
(.(((.((((((..(((((((....((........))....))))))).)))))).))).)..

Structure
-- A   C      AU       Cucg  uga 
  G UGG UGGAAU  CGGUAUU    gc   a
  | ||| ||||||  |||||||    ||    
  C ACC ACCUUA  GCCAUAa    cg   a
AA A   A      -C       auca  uac 


Annotation confidence High
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Genome context
chrII: 438399-438461 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-5593-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-5593-5p

Accession MIMAT0022307
Description Caenorhabditis elegans cel-miR-5593-5p mature miRNA
Sequence 1 - GAUGGCUGGAAUAUCGGUAUUC - 22
Evidence not_experimental
Database links

Mature cel-miR-5593-3p

Accession MIMAT0022308
Description Caenorhabditis elegans cel-miR-5593-3p mature miRNA
Sequence 43 - AUACCGCAUUCCAACCAACAA - 63
Evidence not_experimental
Database links

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52