miRBase entry: cel-mir-5592-1

Stem-loop cel-mir-5592-1


Accession
MI0019153
Description
Caenorhabditis elegans cel-mir-5592-1 precursor miRNA
Gene family
MIPF0001366; mir-5592


Sequence

30572 reads, 359 reads per million, 16 experiments
CGGCCCUUACCGUUUAAUACAUGuucccggucgaugcaccaUGUAUUAAACGGUAAGGGCCGGC
(((((((((((((((((((((((................)))))))))))))))))))))))..

Structure
--                       uucccgg 
  CGGCCCUUACCGUUUAAUACAUG       u
  |||||||||||||||||||||||        
  GCCGGGAAUGGCAAAUUAUGUac       c
CG                       cacguag 


Annotation confidence Not enough data
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Genome context
chrX: 13759245-13759308 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-5592-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-5592-5p

Accession MIMAT0022305
Description Caenorhabditis elegans cel-miR-5592-5p mature miRNA
Sequence 1 - CGGCCCUUACCGUUUAAUACAUG - 23
Evidence not_experimental
Database links

Mature cel-miR-5592-3p

Accession MIMAT0022306
Description Caenorhabditis elegans cel-miR-5592-3p mature miRNA
Sequence 42 - UGUAUUAAACGGUAAGGGCCGGC - 64
Evidence not_experimental
Database links

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52