miRBase entry: sbi-MIR5569

Stem-loop sbi-MIR5569


Accession
MI0019105
Description
Sorghum bicolor sbi-MIR5569 precursor miRNA


Sequence

guaggcucauUAUUGCAUGCUUGAACUAUGGUAAaaauuucauacucauuggaucacauauaacuuaguuauagauaaagcauagauuuaacaagaauaaagcuaaauaaaucuauaacuaaauuuuacuugauccaauggauacaaaacuuuuaccauaguucaagcauacaauaaugaguccaccauaaaaaauuuaccacaauugaaccau
((.((((((((((((.((((((((((((((((((((.(((..((.(((((((((((..((.((.((((((((((((......(((.((((.......)))).))).....)))))))))))).)).))..))))))))))).))..))).)))))))))))))))))))).)))))))))))).))............................

Structure
----------------------------  a            C                    a   ca  c           ca  u  c            aaagca   a    ac 
                            gu ggcucauUAUUG AUGCUUGAACUAUGGUAAaa uuu  ua ucauuggauca  ua aa uuaguuauagau      uag uuua  a
                            || |||||||||||| |||||||||||||||||||| |||  || |||||||||||  || || ||||||||||||      ||| ||||  a
                            ca cugaguaauaac uacgaacuugauaccauuuu aaa  au gguaaccuagu  au uu aaucaauaucua      auc aaau  g
uaccaaguuaacaccauuuaaaaaauac  c            a                    c   ac  a           uc  u  a            -aauaa   g    aa 


Annotation confidence Not enough data
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Genome context
chr5: 66192556-66192769 [+]

Database links

Mature sbi-miR5569

Accession MIMAT0022250
Description Sorghum bicolor sbi-miR5569 mature miRNA
Sequence 11 - UAUUGCAUGCUUGAACUAUGGUAA - 34
Evidence experimental
454 [1]

References

  1. PubMed ID: 21907786
    Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
    "Genomics (2011) 98:460-468